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Piximi Views

  • Main menu (left)
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  • Piximi beginner tutorial (ENGLISH)
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  • Create cell crops with CellProfiler
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Main menu (left)

Main menu (left)#

_images/user-guide-left-drawer-segmentation.png

From this main menu you will be able to create new New projects, open Open previous projects or images and save Save your progress.

You can also access the Classification and Segmentation tools available in Piximi and browse the different Categories you generate during your analysis.

Finally, you can change the UI settings Settings, get help Help using Piximi’s documentation and feedback Send Feedback to help the Piximi project.



_images/user-guide-open-project.png

When you save Save a Piximi project to your local computer, you get a compressed .zip file that you can share or use later to continue your project from where you left.

You can open Open a saved project by loading it from the .zip file directly or, alternatively, from the uncompressed project (.zarr file)

You also have the option to open Open one of the Example Projects to explore and learn about what you can do using Piximi!



_images/user-guide-open-image.png

To load images into Piximi, you can simply drag and drop them into the browser o you can load them from the open Open menu.

There are also some Example Images that you can use to try out Piximi’s tools.



_images/user-guide-open-annotation.png

Once you load images into Piximi, you can also import annotations previously created in Piximi’s Annotator tool using the open Open menu.

Alternatively, you can generate the annotations using another software and save them in COCO (Common Objects in COntext) format to import into Piximi.



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The Annotator

By Broad Institute

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